KnowEnG Knowledge Network
The KnowEnG Knowledge Network (KN) represents community data sets as a massive heterogeneous network, composed primarily of genes (Gene Nodes) and their annotations (Property Nodes) as well as their mutual relationships (Edges). The KN attempts to identify many relevant knowledge bases (Resources), to download their current contents (Datasets) regularly, and to clean and consolidate those disparate resources and construct a unified knowledge graph of multiple relationships (Edge Types) ready for integration with analytic methods.
More information about mapping gene names and fetching subnetworks can be found here.
|BLAST: Basic Local Alignment Search Tool||Edges: 20,291,066|
|Reactome||Nodes: 45,960, Edges: 1,367,088|
|BioGRID: Biological General Repository for Interaction Datasets||Edges: 489,213|
|DIP: Database of Interacting Proteins||Edges: 35,926|
|IntAct: IntAct Molecular Interaction Database||Edges: 305,246|
|Pathway Commons||Nodes: 29,648, Edges: 1,091,999|
|Gene Ontology||Nodes: 46,661, Edges: 1,968,720|
|Pfam: Pfam Protein Families Database||Nodes: 99,591, Edges: 719,858|
|Enrichr||Nodes: 105,874, Edges: 23,314,091|
|MSigDB: Molecular Signatures Database||Nodes: 9,542, Edges: 1,460,291|